# statgenHTP 1.0.5

# statgenHTP 1.0.4

- The
`removeSerieOut`

function now has an extra argument reason allowing for restricting removal of outliers to one or more reason the outliers where tagged.
- The
`plot`

function for `serieOut`

objects now has an extra argument reason allowing for restricting the plotting of outliers to one or more reason the outliers where tagged.
- The
`detectSerieOut`

function is now able to handle plotIds with irregular naming, i.e. plotIds starting with a number.
- The results of
`estimateSplineParameters`

can now be plotted in a box plot and histogram.
- In the
`estimateSplineParameters`

function multiple parameters can now be estimated at once.
- A bug in
`detectSerieOut`

that caused slope outliers to be never detected is fixed.
- A bug causing predictions to be made in
`fitSpline`

for missing values at the beginning or end of a time course is fixed.
- The
`detectSerieOut`

function now checks for number of plotIds per plant in the correct location leading to a more user friendly error message.

# statgenHTP 1.0.3

# statgenHTP 1.0.2

- Plotting second derivatives of fitted splines, plotted first derivatives. This is fixed now.
- The
`detectSerieOut`

function now uses an extra criterion for checking if time courses our outlying. See the function documentation and vignettes for a full explanation of this new criterion.
- The parameter
`trait`

in the `removeSerieOut`

function is renamed to `traits`

and now accepts a vector of traits that for which outlier values can be replaced by `NA`

.
- Plotting the output of
`detectSerieOut`

now has an extra parameter `geno.decomp`

to restrict the output to selected levels of the geno.decomp variable in the data.
- Computing the area under the curve in
`estimateSplineParameters`

now allows the specification of the time unit used on the x-axis.
- Fitting models using SpATS is now done using the option
`centered = TRUE`

by default.

# statgenHTP 1.0.1

# statgenHTP 1.0.0