recluster: Ordination Methods for the Analysis of Beta-Diversity Indices

The analysis of different aspects of biodiversity requires specific algorithms. For example, in regionalisation analyses, the high frequency of ties and zero values in dissimilarity matrices produced by Beta-diversity turnover produces hierarchical cluster dendrograms whose topology and bootstrap supports are affected by the order of rows in the original matrix. Moreover, visualisation of biogeographical regionalisation can be facilitated by a combination of hierarchical clustering and multi-dimensional scaling. The recluster package provides robust techniques to visualise and analyse pattern of biodiversity and to improve occurrence data for cryptic taxa. Other functions related to recluster (e.g. the biodecrypt family) are currently available in GitHub at <https://github.com/leondap/recluster>.

Version: 2.9
Depends: ape
Imports: vegan, picante, phangorn, phytools, cluster, plotrix
Published: 2020-07-26
Author: Leonardo Dapporto, Matteo Ramazzotti, Simone Fattorini, Roger Vila, Gerard Talavera, Roger H.L. Dennis
Maintainer: Leonardo Dapporto <leondap at gmail.com>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2.0)]
URL: https://github.com/leondap/recluster
NeedsCompilation: no
CRAN checks: recluster results

Downloads:

Reference manual: recluster.pdf
Package source: recluster_2.9.tar.gz
Windows binaries: r-devel: recluster_2.9.zip, r-release: recluster_2.9.zip, r-oldrel: recluster_2.9.zip
macOS binaries: r-release (arm64): recluster_2.9.tgz, r-release (x86_64): recluster_2.9.tgz, r-oldrel: recluster_2.9.tgz
Old sources: recluster archive

Linking:

Please use the canonical form https://CRAN.R-project.org/package=recluster to link to this page.