poolABC: Approximate Bayesian Computation with Pooled Sequencing Data

Provides functions to simulate Pool-seq data under models of demographic formation and to import Pool-seq data from real populations. Implements two ABC algorithms for performing parameter estimation and model selection using Pool-seq data. Cross-validation can also be performed to assess the accuracy of ABC estimates and model choice. Carvalho et al., (2022) <doi:10.1111/1755-0998.13834>.

Version: 1.0.0
Depends: R (≥ 2.10)
Imports: doParallel, foreach, ggplot2, graphics, locfit, MetricsWeighted, nnet, poolHelper (≥ 1.1.0), RColorBrewer, rlang, scrm, stats, utils
Suggests: knitr, rmarkdown
Published: 2023-08-08
Author: João Carvalho ORCID iD [aut, cre, cph], Vítor Sousa [aut]
Maintainer: João Carvalho <jgcarvalho at fc.ul.pt>
BugReports: https://github.com/joao-mcarvalho/poolABC/issues
License: GPL (≥ 3)
URL: https://github.com/joao-mcarvalho/poolABC
NeedsCompilation: no
Materials: README NEWS
CRAN checks: poolABC results

Documentation:

Reference manual: poolABC.pdf
Vignettes: poolABC

Downloads:

Package source: poolABC_1.0.0.tar.gz
Windows binaries: r-prerel: poolABC_1.0.0.zip, r-release: poolABC_1.0.0.zip, r-oldrel: poolABC_1.0.0.zip
macOS binaries: r-prerel (arm64): poolABC_1.0.0.tgz, r-release (arm64): poolABC_1.0.0.tgz, r-oldrel (arm64): poolABC_1.0.0.tgz, r-prerel (x86_64): poolABC_1.0.0.tgz, r-release (x86_64): poolABC_1.0.0.tgz

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