localScore: Package for Sequence Analysis by Local Score

Functionalities for calculating the local score and calculating statistical relevance (p-value) to find a local Score in a sequence of given distribution (S. Mercier and J.-J. Daudin (2001) <https://hal.archives-ouvertes.fr/hal-00714174> ; S. Karlin and S. Altschul (1990) <https://www.pnas.org/content/87/6/2264> ; S. Mercier, D. Cellier and F. Charlot (2003) <https://hal.archives-ouvertes.fr/hal-00937529v1> ; A. Lagnoux, S. Mercier and P. Valois (2017) <doi:10.1093/bioinformatics/btw699> ).

Version: 1.0.6
Depends: R (≥ 3.2.0)
Imports: Rcpp (≥ 0.12.16), utils
LinkingTo: Rcpp
Suggests: knitr, rmarkdown, testthat (≥ 2.1.0)
Published: 2021-02-24
Author: Sebastian Simon [aut], David Robelin [aut, cre], Sabine Mercier [aut], Sebastien Dejean [aut], The authors of Eigen the library for the included version of Eigen [cph]
Maintainer: David Robelin <david.robelin at inrae.fr>
License: GPL-2 | GPL-3 | file LICENSE [expanded from: GPL (≥ 2) | file LICENSE]
Copyright: See the file COPYRIGHTS for various embedded Eigen library copyright details
NeedsCompilation: yes
SystemRequirements: C++11
CRAN checks: localScore results

Documentation:

Reference manual: localScore.pdf
Vignettes: Local Score Package

Downloads:

Package source: localScore_1.0.6.tar.gz
Windows binaries: r-devel: localScore_1.0.6.zip, r-devel-UCRT: localScore_1.0.6.zip, r-release: localScore_1.0.6.zip, r-oldrel: localScore_1.0.6.zip
macOS binaries: r-release (arm64): localScore_1.0.6.tgz, r-release (x86_64): localScore_1.0.6.tgz, r-oldrel: localScore_1.0.6.tgz
Old sources: localScore archive

Linking:

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