inctools: Incidence Estimation Tools

Tools for estimating incidence from biomarker data in cross- sectional surveys, and for calibrating tests for recent infection. Implements and extends the method of Kassanjee et al. (2012) <doi:10.1097/EDE.0b013e3182576c07>.

Version: 1.0.15
Depends: R (≥ 3.4.0)
Imports: stats, utils, magrittr, rlang, dplyr, tibble, cubature, tmvtnorm, ggplot2, glm2, plyr, pracma, foreach, parallel, doParallel, binom
Suggests: survey, knitr, rmarkdown
Published: 2019-11-07
Author: Eduard Grebe [cre, aut], Alex Welte [aut], Avery McIntosh [aut], Petra Bäumler [aut], Reshma Kassanjee [ctb], Hilmarie Brand [ctb], Cari Van Schalkwyk [ctb], Yuruo Li [ctb], Simon Daniel [ctb], Stefano Ongarello [aut], Yusuke Asai [ctb], Jeffrey Eaton [ctb]
Maintainer: Eduard Grebe <Eduard.Grebe at ucsf.edu>
BugReports: https://github.com/SACEMA/inctools/issues
License: GPL-3
URL: http://www.incidence-estimation.org/page/inctools
NeedsCompilation: no
CRAN checks: inctools results

Documentation:

Reference manual: inctools.pdf
Vignettes: Estimating incidence
Overview of inctools
Survey design
Test calibration

Downloads:

Package source: inctools_1.0.15.tar.gz
Windows binaries: r-devel: inctools_1.0.15.zip, r-release: inctools_1.0.15.zip, r-oldrel: inctools_1.0.15.zip
macOS binaries: r-release (arm64): inctools_1.0.15.tgz, r-release (x86_64): inctools_1.0.15.tgz, r-oldrel: inctools_1.0.15.tgz
Old sources: inctools archive

Linking:

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