imcExperiment: Mass Cytometry S4 Class Structure Pipeline for Images

Containerizes cytometry data and allows for S4 class structure to extend slots related to cell morphology, spatial coordinates, phenotype network information, and unique cellular labeling.

Version: 0.99.0
Depends: R (≥ 4.0), SingleCellExperiment, methods
Imports: SummarizedExperiment, S4Vectors, spatstat.geom, stats
Suggests: knitr, rmarkdown
Published: 2021-08-19
Author: Anthony Colombo [aut, cre]
Maintainer: Anthony Colombo <anthonycolombo60 at gmail.com>
License: MIT + file LICENSE
NeedsCompilation: no
Materials: README
CRAN checks: imcExperiment results

Documentation:

Reference manual: imcExperiment.pdf
Vignettes: imcExperiment: containerization of IMC data

Downloads:

Package source: imcExperiment_0.99.0.tar.gz
Windows binaries: r-devel: imcExperiment_0.99.0.zip, r-release: imcExperiment_0.99.0.zip, r-oldrel: imcExperiment_0.99.0.zip
macOS binaries: r-release (arm64): imcExperiment_0.99.0.tgz, r-release (x86_64): imcExperiment_0.99.0.tgz, r-oldrel: imcExperiment_0.99.0.tgz

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