Rarefy: Rarefaction Methods

Includes functions for the calculation of spatially and non-spatially explicit rarefaction curves using different indices of taxonomic, functional and phylogenetic diversity. The user can also rarefy any biodiversity metric as provided by a self-written function (or an already existent one) that gives as output a vector with the values of a certain index of biodiversity calculated per plot (Ricotta, C., Acosta, A., Bacaro, G., Carboni, M., Chiarucci, A., Rocchini, D., Pavoine, S. (2019) <doi:10.1016/j.ecolind.2019.105606>; Bacaro, G., Altobelli, A., Cameletti, M., Ciccarelli, D., Martellos, S., Palmer, M. W., … Chiarucci, A. (2016) <doi:10.1016/j.ecolind.2016.04.026>; Bacaro, G., Rocchini, D., Ghisla, A., Marcantonio, M., Neteler, M., & Chiarucci, A. (2012) <doi:10.1016/j.ecocom.2012.05.007>).

Version: 1.1
Depends: R (≥ 3.5.0)
Imports: ade4, adiv, ape, dplyr, geiger, methods, stats, vegan
Suggests: kableExtra, knitr, phyloregion, picante, phytools, raster, rmarkdown
Published: 2021-03-11
Author: Elisa Thouverai [aut, cre], Sandrine Pavoine [aut], Enrico Tordoni [aut], Duccio Rocchini [aut], Carlo Ricotta [aut], Alessandro Chiarucci [aut], Giovanni Bacaro [aut]
Maintainer: Elisa Thouverai <elisa.th95 at gmail.com>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
NeedsCompilation: no
CRAN checks: Rarefy results

Downloads:

Reference manual: Rarefy.pdf
Vignettes: A quick introduction to rarefaction analisys using Rarefy
Package source: Rarefy_1.1.tar.gz
Windows binaries: r-devel: Rarefy_1.1.zip, r-release: Rarefy_1.1.zip, r-oldrel: Rarefy_1.1.zip
macOS binaries: r-release (arm64): Rarefy_1.1.tgz, r-release (x86_64): Rarefy_1.1.tgz, r-oldrel: Rarefy_1.1.tgz
Old sources: Rarefy archive

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