EvoPhylo: Pre- And Postprocessing of Morphological Data from Relaxed Clock Bayesian Phylogenetics

Performs automated morphological character partitioning for phylogenetic analyses and analyze macroevolutionary parameter outputs from clock (time-calibrated) Bayesian inference analyses, following concepts introduced by Simões and Pierce (2021) <doi:10.1038/s41559-021-01532-x>.

Version: 0.3
Depends: R (≥ 4.0.0)
Imports: ape (≥ 1.16.2), dplyr (≥ 1.0.8), cluster (≥ 2.1.2), deeptime (≥ 0.2.0), ggplot2 (≥ 3.3.5), ggrepel (≥ 0.9.1), ggtree (≥ 3.1.5.902), patchwork, treeio (≥ 1.16.2), Rtsne (≥ 0.15), unglue (≥ 0.1.0)
Suggests: kableExtra, knitr, rmarkdown
Published: 2022-08-19
Author: Tiago Simoes ORCID iD [cre, aut], Noah Greifer ORCID iD [aut], Joelle Barido-Sottani ORCID iD [aut], Stephanie Pierce ORCID iD [aut]
Maintainer: Tiago Simoes <trsimoes87 at gmail.com>
BugReports: https://github.com/tiago-simoes/EvoPhylo/issues
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
URL: https://github.com/tiago-simoes/EvoPhylo, https://tiago-simoes.github.io/EvoPhylo/
NeedsCompilation: no
Citation: EvoPhylo citation info
Materials: NEWS
CRAN checks: EvoPhylo results

Documentation:

Reference manual: EvoPhylo.pdf
Vignettes: Character Partitioning
Theoretical background
Analyzing FBD Parameters
Analyzing Trees With Offsets
Evolutionary Rates & Selection Mode

Downloads:

Package source: EvoPhylo_0.3.tar.gz
Windows binaries: r-devel: EvoPhylo_0.1.zip, r-release: EvoPhylo_0.1.zip, r-oldrel: EvoPhylo_0.1.zip
macOS binaries: r-release (arm64): EvoPhylo_0.1.tgz, r-oldrel (arm64): not available, r-release (x86_64): EvoPhylo_0.1.tgz, r-oldrel (x86_64): not available
Old sources: EvoPhylo archive

Linking:

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