CRAN Package Check Results for Package metacoder

Last updated on 2024-02-22 21:51:45 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.3.6 NOTE
r-devel-linux-x86_64-debian-gcc 0.3.7 38.65 154.47 193.12 OK
r-devel-linux-x86_64-fedora-clang 0.3.7 344.25 NOTE
r-devel-linux-x86_64-fedora-gcc 0.3.7 349.49 NOTE
r-devel-windows-x86_64 0.3.6 41.00 224.00 265.00 NOTE
r-patched-linux-x86_64 0.3.7 56.27 200.09 256.36 OK
r-release-linux-x86_64 0.3.6 47.08 209.60 256.68 OK
r-release-macos-arm64 0.3.7 103.00 NOTE
r-release-macos-x86_64 0.3.7 182.00 NOTE
r-release-windows-x86_64 0.3.7 43.00 244.00 287.00 OK
r-oldrel-macos-arm64 0.3.7 91.00 OK
r-oldrel-windows-x86_64 0.3.7 45.00 196.00 241.00 OK

Check Details

Version: 0.3.6
Check: Rd files
Result: NOTE checkRd: (-1) get_sort_var.Rd:14: Lost braces 14 | * `"{{index}}"` : This means to use the index of rows/items | ^ checkRd: (-1) get_sort_var.Rd:15: Lost braces 15 | * `"{{name}}"` : This means to use row/item names. | ^ checkRd: (-1) get_sort_var.Rd:16: Lost braces 16 | * `"{{value}}"` : This means to use the values in vectors or lists. Lists} | ^ checkRd: (-1) lookup_tax_data.Rd:57: Lost braces 57 | * `"{{index}}"` : This means to use the index of rows/items | ^ checkRd: (-1) lookup_tax_data.Rd:58: Lost braces 58 | * `"{{name}}"` : This means to use row/item names. | ^ checkRd: (-1) lookup_tax_data.Rd:59: Lost braces 59 | * `"{{value}}"` : This means to use the values in vectors or lists. Lists | ^ checkRd: (-1) parse_tax_data.Rd:82: Lost braces 82 | following: * For tables, the names of columns can be used. * `"{{index}}"` : This means to use | ^ checkRd: (-1) parse_tax_data.Rd:83: Lost braces 83 | the index of rows/items * `"{{name}}"` : This means to use row/item names. * `"{{value}}"` : | ^ checkRd: (-1) parse_tax_data.Rd:83: Lost braces 83 | the index of rows/items * `"{{name}}"` : This means to use row/item names. * `"{{value}}"` : | ^ Flavor: r-devel-linux-x86_64-debian-clang

Version: 0.3.6
Check: Rd metadata
Result: NOTE Invalid package aliases in Rd file 'taxa-package.Rd': ‘taxa-package’ Flavors: r-devel-linux-x86_64-debian-clang, r-devel-windows-x86_64

Version: 0.3.6
Check: Rd \usage sections
Result: NOTE Documented arguments not in \usage in Rd file 'limited_print.Rd': ‘trunc’ Documented arguments not in \usage in Rd file 'parse_heirarchies_to_taxonomy.Rd': ‘A’ Documented arguments not in \usage in Rd file 'parse_raw_heirarchies_to_taxonomy.Rd': ‘A’ Functions with \usage entries need to have the appropriate \alias entries, and all their arguments documented. The \usage entries must correspond to syntactically valid R code. See chapter ‘Writing R documentation files’ in the ‘Writing R Extensions’ manual. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-windows-x86_64

Version: 0.3.7
Check: dependencies in R code
Result: NOTE Namespace in Imports field not imported from: ‘R6’ All declared Imports should be used. Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 0.3.7
Check: package dependencies
Result: NOTE Packages suggested but not available for checking: 'phyloseq', 'biomformat' Flavors: r-release-macos-arm64, r-release-macos-x86_64