CRAN Package Check Results for Package SpaDES.core

Last updated on 2021-06-21 22:57:16 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.0.8 38.55 345.04 383.59 OK
r-devel-linux-x86_64-debian-gcc 1.0.8 31.23 254.94 286.17 OK
r-devel-linux-x86_64-fedora-clang 1.0.8 482.29 OK
r-devel-linux-x86_64-fedora-gcc 1.0.8 454.06 OK
r-devel-windows-x86_64 1.0.8 60.00 362.00 422.00 OK
r-devel-windows-x86_64-gcc10-UCRT 1.0.8 WARN
r-patched-linux-x86_64 1.0.8 50.67 322.96 373.63 OK
r-patched-solaris-x86 1.0.8 555.50 WARN
r-release-linux-x86_64 1.0.8 45.31 324.88 370.19 OK
r-release-macos-arm64 1.0.8 OK
r-release-macos-x86_64 1.0.8 WARN
r-release-windows-ix86+x86_64 1.0.8 57.00 375.00 432.00 OK
r-oldrel-macos-x86_64 1.0.8 WARN

Check Details

Version: 1.0.8
Check: package dependencies
Result: NOTE
    Packages suggested but not available for checking:
     'covr', 'googledrive', 'httr'
Flavor: r-devel-windows-x86_64-gcc10-UCRT

Version: 1.0.8
Check: Rd cross-references
Result: NOTE
    Package unavailable to check Rd xrefs: 'covr'
Flavor: r-devel-windows-x86_64-gcc10-UCRT

Version: 1.0.8
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
    --- re-building 'i-introduction.Rmd' using rmarkdown
    --- finished re-building 'i-introduction.Rmd'
    
    --- re-building 'ii-modules.Rmd' using rmarkdown
    
    Attaching package: 'magrittr'
    
    The following object is masked from 'package:raster':
    
     extract
    
    Setting:
     options(
     spades.modulePath = 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/SpaDES.core/SpaDES.core.Rcheck/SpaDES.core/sampleModules'
     )
    Paths set to:
     options(
     rasterTmpDir = 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/SpaDES.core/tmp/Rtmp8eCeOb/raster'
     reproducible.cachePath = 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/SpaDES.core/tmp/Rtmp8eCeOb/Require/cache'
     spades.inputPath = 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/SpaDES.core/tmp/RtmpsfUF5f/SpaDES/inputs'
     spades.outputPath = 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/SpaDES.core/tmp/RtmpsfUF5f/SpaDES/outputs'
     spades.modulePath = 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/SpaDES.core/SpaDES.core.Rcheck/SpaDES.core/sampleModules'
     )
    Jun19 21:24:45 chckpn total elpsd: 0.008 secs | 0 checkpoint init 0
    Jun19 21:24:45 save total elpsd: 0.017 secs | 0 save init 0
    Jun19 21:24:45 prgrss total elpsd: 0.023 secs | 0 progress init 0
    Jun19 21:24:45 load total elpsd: 0.028 secs | 0 load init 0
    Jun19 21:24:45 rndmLn total elpsd: 0.033 secs | 0 randomLandscapes init
    Jun19 21:24:45 frSprd total elpsd: 0.74 secs | 0 fireSpread init 1
    Jun19 21:24:45 crbMvm total elpsd: 0.76 secs | 0 caribouMovement init 1
    Jun19 21:24:45 frSprd total elpsd: 0.79 secs | 0 fireSpread burn 5
    Jun19 21:24:45 frSprd total elpsd: 0.93 secs | 0 fireSpread stats 5
    Jun19 21:24:45 rndmLn total elpsd: 0.94 secs | 0 randomLandscapes plot
    Jun19 21:24:46 frSprd total elpsd: 1.3 secs | 0 fireSpread plot.init 10
    Jun19 21:24:46 crbMvm total elpsd: 1.5 secs | 0.08333 caribouMovement p
    Jun19 21:24:46 crbMvm total elpsd: 1.6 secs | 0.1667 caribouMovement pl
    Jun19 21:24:46 crbMvm total elpsd: 1.8 secs | 0.25 caribouMovement plot
    Jun19 21:24:46 crbMvm total elpsd: 1.9 secs | 0.3333 caribouMovement pl
    Jun19 21:24:47 crbMvm total elpsd: 2.1 secs | 0.4167 caribouMovement pl
    Jun19 21:24:47 crbMvm total elpsd: 2.3 secs | 0.5 caribouMovement plot
    Jun19 21:24:47 crbMvm total elpsd: 2.4 secs | 0.5833 caribouMovement pl
    Jun19 21:24:47 crbMvm total elpsd: 2.6 secs | 0.6667 caribouMovement pl
    Jun19 21:24:47 crbMvm total elpsd: 2.8 secs | 0.75 caribouMovement plot
    Jun19 21:24:47 crbMvm total elpsd: 2.9 secs | 0.8333 caribouMovement pl
    Jun19 21:24:48 crbMvm total elpsd: 3.1 secs | 0.9167 caribouMovement pl
    Jun19 21:24:48 crbMvm total elpsd: 3.2 secs | 1 caribouMovement move 5
    Jun19 21:24:48 frSprd total elpsd: 3.3 secs | 1 fireSpread burn 5
    Jun19 21:24:48 frSprd total elpsd: 3.3 secs | 1 fireSpread stats 5
    Jun19 21:24:48 crbMvm total elpsd: 3.3 secs | 1 caribouMovement plot 10
    Jun19 21:24:48 crbMvm total elpsd: 3.5 secs | 1.083 caribouMovement mov
    Jun19 21:24:48 crbMvm total elpsd: 3.5 secs | 1.083 caribouMovement plo
    Jun19 21:24:48 crbMvm total elpsd: 3.7 secs | 1.167 caribouMovement mov
    Jun19 21:24:48 crbMvm total elpsd: 3.7 secs | 1.167 caribouMovement plo
    Jun19 21:24:48 crbMvm total elpsd: 3.8 secs | 1.25 caribouMovement move
    Jun19 21:24:48 crbMvm total elpsd: 3.8 secs | 1.25 caribouMovement plot
    Jun19 21:24:49 crbMvm total elpsd: 4 secs | 1.333 caribouMovement move
    Jun19 21:24:49 crbMvm total elpsd: 4 secs | 1.333 caribouMovement plot
    Jun19 21:24:49 crbMvm total elpsd: 4.2 secs | 1.417 caribouMovement mov
    Jun19 21:24:49 crbMvm total elpsd: 4.2 secs | 1.417 caribouMovement plo
    Jun19 21:24:49 crbMvm total elpsd: 4.4 secs | 1.5 caribouMovement move
    Jun19 21:24:49 crbMvm total elpsd: 4.4 secs | 1.5 caribouMovement plot
    Jun19 21:24:49 crbMvm total elpsd: 4.6 secs | 1.583 caribouMovement mov
    Jun19 21:24:49 crbMvm total elpsd: 4.6 secs | 1.583 caribouMovement plo
    Jun19 21:24:49 crbMvm total elpsd: 4.7 secs | 1.667 caribouMovement mov
    Jun19 21:24:49 crbMvm total elpsd: 4.8 secs | 1.667 caribouMovement plo
    Jun19 21:24:49 crbMvm total elpsd: 4.9 secs | 1.75 caribouMovement move
    Jun19 21:24:49 crbMvm total elpsd: 4.9 secs | 1.75 caribouMovement plot
    Jun19 21:24:50 crbMvm total elpsd: 5.1 secs | 1.833 caribouMovement mov
    Jun19 21:24:50 crbMvm total elpsd: 5.1 secs | 1.833 caribouMovement plo
    Jun19 21:24:50 crbMvm total elpsd: 5.2 secs | 1.917 caribouMovement mov
    Jun19 21:24:50 crbMvm total elpsd: 5.2 secs | 1.917 caribouMovement plo
    Jun19 21:24:50 frSprd total elpsd: 5.4 secs | 2 fireSpread burn 5
    Jun19 21:24:50 crbMvm total elpsd: 5.5 secs | 2 caribouMovement move 5
    Jun19 21:24:50 frSprd total elpsd: 5.5 secs | 2 fireSpread stats 5
    Jun19 21:24:50 crbMvm total elpsd: 5.5 secs | 2 caribouMovement plot 10
    simList saved in
     SpaDES.core:::.pkgEnv$.sim
    It will be deleted at next spades() call.
    Setting:
     options(
     spades.modulePath = 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/SpaDES.core/SpaDES.core.Rcheck/SpaDES.core/sampleModules'
     )
    Paths set to:
     options(
     rasterTmpDir = 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/SpaDES.core/tmp/Rtmp8eCeOb/raster'
     reproducible.cachePath = 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/SpaDES.core/tmp/Rtmp8eCeOb/Require/cache'
     spades.inputPath = 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/SpaDES.core/tmp/RtmpsfUF5f/SpaDES/inputs'
     spades.outputPath = 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/SpaDES.core/tmp/RtmpsfUF5f/SpaDES/outputs'
     spades.modulePath = 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/SpaDES.core/SpaDES.core.Rcheck/SpaDES.core/sampleModules'
     )
    Setting:
     options(
     spades.modulePath = 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/SpaDES.core/SpaDES.core.Rcheck/SpaDES.core/sampleModules'
     )
    Paths set to:
     options(
     rasterTmpDir = 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/SpaDES.core/tmp/Rtmp8eCeOb/raster'
     reproducible.cachePath = 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/SpaDES.core/tmp/Rtmp8eCeOb/Require/cache'
     spades.inputPath = 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/SpaDES.core/tmp/RtmpsfUF5f/SpaDES/inputs'
     spades.outputPath = 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/SpaDES.core/tmp/RtmpsfUF5f/SpaDES/outputs'
     spades.modulePath = 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/SpaDES.core/SpaDES.core.Rcheck/SpaDES.core/sampleModules'
     )
    Setting:
     options(
     spades.modulePath = 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/SpaDES.core/SpaDES.core.Rcheck/SpaDES.core/sampleModules'
     )
    Paths set to:
     options(
     rasterTmpDir = 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/SpaDES.core/tmp/Rtmp8eCeOb/raster'
     reproducible.cachePath = 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/SpaDES.core/tmp/Rtmp8eCeOb/Require/cache'
     spades.inputPath = 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/SpaDES.core/tmp/RtmpsfUF5f/SpaDES/inputs'
     spades.outputPath = 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/SpaDES.core/tmp/RtmpsfUF5f/SpaDES/outputs'
     spades.modulePath = 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/SpaDES.core/SpaDES.core.Rcheck/SpaDES.core/sampleModules'
     )
    
    Attaching package: 'data.table'
    
    The following object is masked from 'package:raster':
    
     shift
    
    Setting:
     options(
     spades.outputPath = 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/SpaDES.core/tmp/Rtmp8eCeOb/simOutputs'
     spades.modulePath = 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/SpaDES.core/SpaDES.core.Rcheck/SpaDES.core/sampleModules'
     )
    Paths set to:
     options(
     rasterTmpDir = 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/SpaDES.core/tmp/Rtmp8eCeOb/raster'
     reproducible.cachePath = 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/SpaDES.core/tmp/Rtmp8eCeOb/Require/cache'
     spades.inputPath = 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/SpaDES.core/tmp/RtmpsfUF5f/SpaDES/inputs'
     spades.outputPath = 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/SpaDES.core/tmp/Rtmp8eCeOb/simOutputs'
     spades.modulePath = 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/SpaDES.core/SpaDES.core.Rcheck/SpaDES.core/sampleModules'
     )
    Jun19 21:24:52 chckpn total elpsd: 0.002 secs | 0 checkpoint init 0
    Jun19 21:24:52 save total elpsd: 0.006 secs | 0 save init 0
    Jun19 21:24:52 prgrss total elpsd: 0.012 secs | 0 progress init 0
    Jun19 21:24:52 load total elpsd: 0.016 secs | 0 load init 0
    Jun19 21:24:52 rndmLn total elpsd: 0.02 secs | 0 randomLandscapes init
    Jun19 21:24:52 rndmLn total elpsd: 0.38 secs | 0 randomLandscapes plot
    Jun19 21:24:52 rndmLn total elpsd: 0.51 secs | 0 randomLandscapes save
    Jun19 21:24:52 save total elpsd: 0.6 secs | 10 save spades 10
    Jun19 21:24:53 save total elpsd: 0.97 secs | 10 save later 10
    Jun19 21:24:53 rndmLn total elpsd: 0.97 secs | 10 randomLandscapes save
    simList saved in
     SpaDES.core:::.pkgEnv$.sim
    It will be deleted at next spades() call.
    Jun19 21:24:53 chckpn total elpsd: 1.1 secs | 0 checkpoint init 0
    Jun19 21:24:53 save total elpsd: 1.1 secs | 0 save init 0
    Jun19 21:24:53 prgrss total elpsd: 1.1 secs | 0 progress init 0
    Jun19 21:24:53 load total elpsd: 1.1 secs | 0 load init 0
    Jun19 21:24:53 rndmLn total elpsd: 1.1 secs | 0 randomLandscapes init 1
    Jun19 21:24:53 rndmLn total elpsd: 1.4 secs | 0 randomLandscapes plot 1
    Jun19 21:24:53 rndmLn total elpsd: 1.5 secs | 0 randomLandscapes save 1
    Jun19 21:24:53 save total elpsd: 1.6 secs | 3 save spades 10
    Jun19 21:24:54 save total elpsd: 1.7 secs | 3 save later 10
    Jun19 21:24:54 save total elpsd: 1.7 secs | 6 save later 10
    Jun19 21:24:54 save total elpsd: 2.2 secs | 6 save later 10
    Jun19 21:24:54 rndmLn total elpsd: 2.2 secs | 10 randomLandscapes save
    simList saved in
     SpaDES.core:::.pkgEnv$.sim
    It will be deleted at next spades() call.
    --- finished re-building 'ii-modules.Rmd'
    
    --- re-building 'iii-cache.Rmd' using rmarkdown
    
    Attaching package: 'raster'
    
    The following object is masked from 'package:magrittr':
    
     extract
    
    Loading required package: quickPlot
    
    Attaching package: 'SpaDES.core'
    
    The following objects are masked from 'package:stats':
    
     end, start
    
    The following object is masked from 'package:utils':
    
     citation
    
    Setting:
     options(
     spades.modulePath = 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/SpaDES.core/SpaDES.core.Rcheck/SpaDES.core/sampleModules'
     )
    Paths set to:
     options(
     rasterTmpDir = 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/SpaDES.core/tmp/RtmpOMsrL7/raster'
     reproducible.cachePath = 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/SpaDES.core/tmp/RtmpOMsrL7/Require/cache'
     spades.inputPath = 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/SpaDES.core/tmp/RtmpsfUF5f/SpaDES/inputs'
     spades.outputPath = 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/SpaDES.core/tmp/RtmpsfUF5f/SpaDES/outputs'
     spades.modulePath = 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/SpaDES.core/SpaDES.core.Rcheck/SpaDES.core/sampleModules'
     )
    Loading required package: RColorBrewer
    Failed with error: 'there is no package called 'googledrive''
    Quitting from lines 141-151 (iii-cache.Rmd)
    Error: processing vignette 'iii-cache.Rmd' failed with diagnostics:
    googledrive is required but not yet installed. Try: install.packages('googledrive') to use google drive files
    --- failed re-building 'iii-cache.Rmd'
    
    --- re-building 'iv-advanced.Rmd' using rmarkdown
    --- finished re-building 'iv-advanced.Rmd'
    
    --- re-building 'v-automated-testing.Rmd' using rmarkdown
    --- finished re-building 'v-automated-testing.Rmd'
    
    SUMMARY: processing the following file failed:
     'iii-cache.Rmd'
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-devel-windows-x86_64-gcc10-UCRT

Version: 1.0.8
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
     ...
    --- re-building ‘i-introduction.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) not available. Falling back to R Markdown v1.
    --- finished re-building ‘i-introduction.Rmd’
    
    --- re-building ‘ii-modules.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) not available. Falling back to R Markdown v1.
    
    Attaching package: 'magrittr'
    
    The following object is masked from 'package:raster':
    
     extract
    
    Setting:
     options(
     spades.modulePath = '/home/ripley/R/Lib32/SpaDES.core/sampleModules'
     )
    Paths set to:
     options(
     rasterTmpDir = '/tmp/RtmpvAaqNc/working_dir/RtmptMaWSb/raster'
     reproducible.cachePath = '/tmp/RtmpvAaqNc/working_dir/RtmptMaWSb/Require/cache'
     spades.inputPath = '/tmp/RtmpSla4S4/SpaDES/inputs'
     spades.outputPath = '/tmp/RtmpSla4S4/SpaDES/outputs'
     spades.modulePath = '/home/ripley/R/Lib32/SpaDES.core/sampleModules'
     )
    Jun10 16:41:35 chckpn total elpsd: 0.01 secs | 0 checkpoint init 0
    Jun10 16:41:35 save total elpsd: 0.025 secs | 0 save init 0
    Jun10 16:41:35 prgrss total elpsd: 0.033 secs | 0 progress init 0
    Jun10 16:41:35 load total elpsd: 0.041 secs | 0 load init 0
    Jun10 16:41:35 rndmLn total elpsd: 0.047 secs | 0 randomLandscapes init
    Jun10 16:41:36 frSprd total elpsd: 0.91 secs | 0 fireSpread init 1
    Jun10 16:41:36 crbMvm total elpsd: 0.94 secs | 0 caribouMovement init 1
    Jun10 16:41:36 frSprd total elpsd: 0.97 secs | 0 fireSpread burn 5
    Jun10 16:41:36 frSprd total elpsd: 1.2 secs | 0 fireSpread stats 5
    Jun10 16:41:36 rndmLn total elpsd: 1.2 secs | 0 randomLandscapes plot 1
    Jun10 16:41:37 frSprd total elpsd: 1.5 secs | 0 fireSpread plot.init 10
    Jun10 16:41:37 crbMvm total elpsd: 1.8 secs | 0.08333 caribouMovement p
    Jun10 16:41:37 crbMvm total elpsd: 2 secs | 0.1667 caribouMovement plot
    Jun10 16:41:37 crbMvm total elpsd: 2.1 secs | 0.25 caribouMovement plot
    Jun10 16:41:38 crbMvm total elpsd: 2.3 secs | 0.3333 caribouMovement pl
    Jun10 16:41:38 crbMvm total elpsd: 2.5 secs | 0.4167 caribouMovement pl
    Jun10 16:41:38 crbMvm total elpsd: 2.7 secs | 0.5 caribouMovement plot
    Jun10 16:41:38 crbMvm total elpsd: 2.9 secs | 0.5833 caribouMovement pl
    Jun10 16:41:38 crbMvm total elpsd: 3 secs | 0.6667 caribouMovement plot
    Jun10 16:41:38 crbMvm total elpsd: 3.2 secs | 0.75 caribouMovement plot
    Jun10 16:41:39 crbMvm total elpsd: 3.4 secs | 0.8333 caribouMovement pl
    Jun10 16:41:39 crbMvm total elpsd: 3.5 secs | 0.9167 caribouMovement pl
    Jun10 16:41:39 crbMvm total elpsd: 3.7 secs | 1 caribouMovement move 5
    Jun10 16:41:39 frSprd total elpsd: 3.8 secs | 1 fireSpread burn 5
    Jun10 16:41:39 frSprd total elpsd: 3.9 secs | 1 fireSpread stats 5
    Jun10 16:41:39 crbMvm total elpsd: 3.9 secs | 1 caribouMovement plot 10
    Jun10 16:41:39 crbMvm total elpsd: 4.1 secs | 1.083 caribouMovement mov
    Jun10 16:41:39 crbMvm total elpsd: 4.1 secs | 1.083 caribouMovement plo
    Jun10 16:41:40 crbMvm total elpsd: 4.3 secs | 1.167 caribouMovement mov
    Jun10 16:41:40 crbMvm total elpsd: 4.3 secs | 1.167 caribouMovement plo
    Jun10 16:41:40 crbMvm total elpsd: 4.5 secs | 1.25 caribouMovement move
    Jun10 16:41:40 crbMvm total elpsd: 4.5 secs | 1.25 caribouMovement plot
    Jun10 16:41:40 crbMvm total elpsd: 4.7 secs | 1.333 caribouMovement mov
    Jun10 16:41:40 crbMvm total elpsd: 4.7 secs | 1.333 caribouMovement plo
    Jun10 16:41:40 crbMvm total elpsd: 4.9 secs | 1.417 caribouMovement mov
    Jun10 16:41:40 crbMvm total elpsd: 4.9 secs | 1.417 caribouMovement plo
    Jun10 16:41:40 crbMvm total elpsd: 5.1 secs | 1.5 caribouMovement move
    Jun10 16:41:40 crbMvm total elpsd: 5.1 secs | 1.5 caribouMovement plot
    Jun10 16:41:40 crbMvm total elpsd: 5.3 secs | 1.583 caribouMovement mov
    Jun10 16:41:41 crbMvm total elpsd: 5.3 secs | 1.583 caribouMovement plo
    Jun10 16:41:41 crbMvm total elpsd: 5.5 secs | 1.667 caribouMovement mov
    Jun10 16:41:41 crbMvm total elpsd: 5.5 secs | 1.667 caribouMovement plo
    Jun10 16:41:41 crbMvm total elpsd: 5.7 secs | 1.75 caribouMovement move
    Jun10 16:41:41 crbMvm total elpsd: 5.7 secs | 1.75 caribouMovement plot
    Jun10 16:41:41 crbMvm total elpsd: 5.9 secs | 1.833 caribouMovement mov
    Jun10 16:41:41 crbMvm total elpsd: 5.9 secs | 1.833 caribouMovement plo
    Jun10 16:41:41 crbMvm total elpsd: 6.1 secs | 1.917 caribouMovement mov
    Jun10 16:41:41 crbMvm total elpsd: 6.1 secs | 1.917 caribouMovement plo
    Jun10 16:41:41 frSprd total elpsd: 6.3 secs | 2 fireSpread burn 5
    Jun10 16:41:42 crbMvm total elpsd: 6.3 secs | 2 caribouMovement move 5
    Jun10 16:41:42 frSprd total elpsd: 6.3 secs | 2 fireSpread stats 5
    Jun10 16:41:42 crbMvm total elpsd: 6.4 secs | 2 caribouMovement plot 10
    simList saved in
     SpaDES.core:::.pkgEnv$.sim
    It will be deleted at next spades() call.
    Quitting from lines 389-391 (ii-modules.Rmd)
    Error: processing vignette 'ii-modules.Rmd' failed with diagnostics:
    there is no package called 'webshot'
    --- failed re-building ‘ii-modules.Rmd’
    
    --- re-building ‘iii-cache.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) not available. Falling back to R Markdown v1.
    
    Attaching package: 'raster'
    
    The following object is masked from 'package:magrittr':
    
     extract
    
    Loading required package: quickPlot
    
    Attaching package: 'SpaDES.core'
    
    The following objects are masked from 'package:stats':
    
     end, start
    
    The following object is masked from 'package:utils':
    
     citation
    
    Setting:
     options(
     spades.modulePath = '/home/ripley/R/Lib32/SpaDES.core/sampleModules'
     )
    Paths set to:
     options(
     rasterTmpDir = '/tmp/RtmpvAaqNc/working_dir/RtmpqTaaic/raster'
     reproducible.cachePath = '/tmp/RtmpvAaqNc/working_dir/RtmpqTaaic/Require/cache'
     spades.inputPath = '/tmp/RtmpSla4S4/SpaDES/inputs'
     spades.outputPath = '/tmp/RtmpSla4S4/SpaDES/outputs'
     spades.modulePath = '/home/ripley/R/Lib32/SpaDES.core/sampleModules'
     )
    Loading required package: RColorBrewer
    --- finished re-building ‘iii-cache.Rmd’
    
    --- re-building ‘iv-advanced.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) not available. Falling back to R Markdown v1.
    --- finished re-building ‘iv-advanced.Rmd’
    
    --- re-building ‘v-automated-testing.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) not available. Falling back to R Markdown v1.
    --- finished re-building ‘v-automated-testing.Rmd’
    
    SUMMARY: processing the following file failed:
     ‘ii-modules.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-patched-solaris-x86

Version: 1.0.8
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
    --- re-building ‘i-introduction.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) not available. Falling back to R Markdown v1.
    --- finished re-building ‘i-introduction.Rmd’
    
    --- re-building ‘ii-modules.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) not available. Falling back to R Markdown v1.
    
    Attaching package: 'magrittr'
    
    The following object is masked from 'package:raster':
    
     extract
    
    Setting:
     options(
     spades.modulePath = '/Volumes/Builds/packages/high-sierra-x86_64/results/4.1/SpaDES.core.Rcheck/SpaDES.core/sampleModules'
     )
    Paths set to:
     options(
     rasterTmpDir = '/Volumes/Temp/tmp/Rtmp4drKP3/raster'
     reproducible.cachePath = '/Volumes/Temp/tmp/Rtmp4drKP3/Require/cache'
     spades.inputPath = '/Volumes/Temp/tmp/Rtmp3kUDwQ/SpaDES/inputs'
     spades.outputPath = '/Volumes/Temp/tmp/Rtmp3kUDwQ/SpaDES/outputs'
     spades.modulePath = '/Volumes/Builds/packages/high-sierra-x86_64/results/4.1/SpaDES.core.Rcheck/SpaDES.core/sampleModules'
     )
    Jun11 08:59:57 chckpn total elpsd: 0.0026 secs | 0 checkpoint init 0
    Jun11 08:59:57 save total elpsd: 0.0062 secs | 0 save init 0
    Jun11 08:59:57 prgrss total elpsd: 0.0081 secs | 0 progress init 0
    Jun11 08:59:57 load total elpsd: 0.0099 secs | 0 load init 0
    Jun11 08:59:57 rndmLn total elpsd: 0.011 secs | 0 randomLandscapes init
    Jun11 08:59:57 frSprd total elpsd: 0.24 secs | 0 fireSpread init 1
    Jun11 08:59:57 crbMvm total elpsd: 0.25 secs | 0 caribouMovement init 1
    Jun11 08:59:57 frSprd total elpsd: 0.26 secs | 0 fireSpread burn 5
    Jun11 08:59:57 frSprd total elpsd: 0.3 secs | 0 fireSpread stats 5
    Jun11 08:59:57 rndmLn total elpsd: 0.31 secs | 0 randomLandscapes plot
    Jun11 08:59:57 frSprd total elpsd: 0.41 secs | 0 fireSpread plot.init 1
    Jun11 08:59:57 crbMvm total elpsd: 0.54 secs | 0.08333 caribouMovement
    Jun11 08:59:57 crbMvm total elpsd: 0.58 secs | 0.1667 caribouMovement p
    Jun11 08:59:57 crbMvm total elpsd: 0.63 secs | 0.25 caribouMovement plo
    Jun11 08:59:57 crbMvm total elpsd: 0.68 secs | 0.3333 caribouMovement p
    Jun11 08:59:57 crbMvm total elpsd: 0.73 secs | 0.4167 caribouMovement p
    Jun11 08:59:57 crbMvm total elpsd: 0.79 secs | 0.5 caribouMovement plot
    Jun11 08:59:57 crbMvm total elpsd: 0.84 secs | 0.5833 caribouMovement p
    Jun11 08:59:58 crbMvm total elpsd: 0.89 secs | 0.6667 caribouMovement p
    Jun11 08:59:58 crbMvm total elpsd: 0.94 secs | 0.75 caribouMovement plo
    Jun11 08:59:58 crbMvm total elpsd: 0.98 secs | 0.8333 caribouMovement p
    Jun11 08:59:58 crbMvm total elpsd: 1 secs | 0.9167 caribouMovement plot
    Jun11 08:59:58 crbMvm total elpsd: 1.1 secs | 1 caribouMovement move 5
    Jun11 08:59:58 frSprd total elpsd: 1.1 secs | 1 fireSpread burn 5
    Jun11 08:59:58 frSprd total elpsd: 1.1 secs | 1 fireSpread stats 5
    Jun11 08:59:58 crbMvm total elpsd: 1.1 secs | 1 caribouMovement plot 10
    Jun11 08:59:58 crbMvm total elpsd: 1.2 secs | 1.083 caribouMovement mov
    Jun11 08:59:58 crbMvm total elpsd: 1.2 secs | 1.083 caribouMovement plo
    Jun11 08:59:58 crbMvm total elpsd: 1.2 secs | 1.167 caribouMovement mov
    Jun11 08:59:58 crbMvm total elpsd: 1.3 secs | 1.167 caribouMovement plo
    Jun11 08:59:58 crbMvm total elpsd: 1.3 secs | 1.25 caribouMovement move
    Jun11 08:59:58 crbMvm total elpsd: 1.3 secs | 1.25 caribouMovement plot
    Jun11 08:59:58 crbMvm total elpsd: 1.4 secs | 1.333 caribouMovement mov
    Jun11 08:59:58 crbMvm total elpsd: 1.4 secs | 1.333 caribouMovement plo
    Jun11 08:59:58 crbMvm total elpsd: 1.4 secs | 1.417 caribouMovement mov
    Jun11 08:59:58 crbMvm total elpsd: 1.4 secs | 1.417 caribouMovement plo
    Jun11 08:59:58 crbMvm total elpsd: 1.5 secs | 1.5 caribouMovement move
    Jun11 08:59:58 crbMvm total elpsd: 1.5 secs | 1.5 caribouMovement plot
    Jun11 08:59:58 crbMvm total elpsd: 1.5 secs | 1.583 caribouMovement mov
    Jun11 08:59:58 crbMvm total elpsd: 1.5 secs | 1.583 caribouMovement plo
    Jun11 08:59:58 crbMvm total elpsd: 1.6 secs | 1.667 caribouMovement mov
    Jun11 08:59:58 crbMvm total elpsd: 1.6 secs | 1.667 caribouMovement plo
    Jun11 08:59:58 crbMvm total elpsd: 1.7 secs | 1.75 caribouMovement move
    Jun11 08:59:58 crbMvm total elpsd: 1.7 secs | 1.75 caribouMovement plot
    Jun11 08:59:58 crbMvm total elpsd: 1.7 secs | 1.833 caribouMovement mov
    Jun11 08:59:58 crbMvm total elpsd: 1.7 secs | 1.833 caribouMovement plo
    Jun11 08:59:58 crbMvm total elpsd: 1.8 secs | 1.917 caribouMovement mov
    Jun11 08:59:58 crbMvm total elpsd: 1.8 secs | 1.917 caribouMovement plo
    Jun11 08:59:58 frSprd total elpsd: 1.8 secs | 2 fireSpread burn 5
    Jun11 08:59:58 crbMvm total elpsd: 1.8 secs | 2 caribouMovement move 5
    Jun11 08:59:58 frSprd total elpsd: 1.9 secs | 2 fireSpread stats 5
    Jun11 08:59:58 crbMvm total elpsd: 1.9 secs | 2 caribouMovement plot 10
    simList saved in
     SpaDES.core:::.pkgEnv$.sim
    It will be deleted at next spades() call.
    Quitting from lines 389-391 (ii-modules.Rmd)
    Error: processing vignette 'ii-modules.Rmd' failed with diagnostics:
    invalid 'path' argument
    --- failed re-building ‘ii-modules.Rmd’
    
    --- re-building ‘iii-cache.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) not available. Falling back to R Markdown v1.
    
    Attaching package: 'raster'
    
    The following object is masked from 'package:magrittr':
    
     extract
    
    Loading required package: quickPlot
    
    Attaching package: 'SpaDES.core'
    
    The following objects are masked from 'package:stats':
    
     end, start
    
    The following object is masked from 'package:utils':
    
     citation
    
    Setting:
     options(
     spades.modulePath = '/Volumes/Builds/packages/high-sierra-x86_64/results/4.1/SpaDES.core.Rcheck/SpaDES.core/sampleModules'
     )
    Paths set to:
     options(
     rasterTmpDir = '/Volumes/Temp/tmp/Rtmp81Ydqi/raster'
     reproducible.cachePath = '/Volumes/Temp/tmp/Rtmp81Ydqi/Require/cache'
     spades.inputPath = '/Volumes/Temp/tmp/Rtmp3kUDwQ/SpaDES/inputs'
     spades.outputPath = '/Volumes/Temp/tmp/Rtmp3kUDwQ/SpaDES/outputs'
     spades.modulePath = '/Volumes/Builds/packages/high-sierra-x86_64/results/4.1/SpaDES.core.Rcheck/SpaDES.core/sampleModules'
     )
    Loading required package: RColorBrewer
    --- finished re-building ‘iii-cache.Rmd’
    
    --- re-building ‘iv-advanced.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) not available. Falling back to R Markdown v1.
    --- finished re-building ‘iv-advanced.Rmd’
    
    --- re-building ‘v-automated-testing.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) not available. Falling back to R Markdown v1.
    --- finished re-building ‘v-automated-testing.Rmd’
    
    SUMMARY: processing the following file failed:
     ‘ii-modules.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-release-macos-x86_64

Version: 1.0.8
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
    --- re-building ‘i-introduction.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) not available. Falling back to R Markdown v1.
    --- finished re-building ‘i-introduction.Rmd’
    
    --- re-building ‘ii-modules.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) not available. Falling back to R Markdown v1.
    
    Attaching package: 'magrittr'
    
    The following object is masked from 'package:raster':
    
     extract
    
    Setting:
     options(
     spades.modulePath = '/Volumes/Builds/packages/high-sierra-x86_64/results/4.0/SpaDES.core.Rcheck/SpaDES.core/sampleModules'
     )
    Paths set to:
     options(
     rasterTmpDir = '/Volumes/Temp/tmp/Rtmp6COeYq/raster'
     reproducible.cachePath = '/Volumes/Temp/tmp/Rtmp6COeYq/Require/cache'
     spades.inputPath = '/Volumes/Temp/tmp/RtmpjOO11B/SpaDES/inputs'
     spades.outputPath = '/Volumes/Temp/tmp/RtmpjOO11B/SpaDES/outputs'
     spades.modulePath = '/Volumes/Builds/packages/high-sierra-x86_64/results/4.0/SpaDES.core.Rcheck/SpaDES.core/sampleModules'
     )
    Jun11 07:56:13 chckpn total elpsd: 0.0021 secs | 0 checkpoint init 0
    Jun11 07:56:13 save total elpsd: 0.0058 secs | 0 save init 0
    Jun11 07:56:13 prgrss total elpsd: 0.0082 secs | 0 progress init 0
    Jun11 07:56:13 load total elpsd: 0.01 secs | 0 load init 0
    Jun11 07:56:13 rndmLn total elpsd: 0.012 secs | 0 randomLandscapes init
    Jun11 07:56:14 frSprd total elpsd: 0.23 secs | 0 fireSpread init 1
    Jun11 07:56:14 crbMvm total elpsd: 0.24 secs | 0 caribouMovement init 1
    Jun11 07:56:14 frSprd total elpsd: 0.25 secs | 0 fireSpread burn 5
    Jun11 07:56:14 frSprd total elpsd: 0.3 secs | 0 fireSpread stats 5
    Jun11 07:56:14 rndmLn total elpsd: 0.31 secs | 0 randomLandscapes plot
    Jun11 07:56:14 frSprd total elpsd: 0.41 secs | 0 fireSpread plot.init 1
    Jun11 07:56:14 crbMvm total elpsd: 0.52 secs | 0.08333 caribouMovement
    Jun11 07:56:14 crbMvm total elpsd: 0.57 secs | 0.1667 caribouMovement p
    Jun11 07:56:14 crbMvm total elpsd: 0.64 secs | 0.25 caribouMovement plo
    Jun11 07:56:14 crbMvm total elpsd: 0.7 secs | 0.3333 caribouMovement pl
    Jun11 07:56:14 crbMvm total elpsd: 0.77 secs | 0.4167 caribouMovement p
    Jun11 07:56:14 crbMvm total elpsd: 0.83 secs | 0.5 caribouMovement plot
    Jun11 07:56:14 crbMvm total elpsd: 0.9 secs | 0.5833 caribouMovement pl
    Jun11 07:56:14 crbMvm total elpsd: 0.97 secs | 0.6667 caribouMovement p
    Jun11 07:56:14 crbMvm total elpsd: 1 secs | 0.75 caribouMovement plot 1
    Jun11 07:56:15 crbMvm total elpsd: 1.1 secs | 0.8333 caribouMovement pl
    Jun11 07:56:15 crbMvm total elpsd: 1.2 secs | 0.9167 caribouMovement pl
    Jun11 07:56:15 crbMvm total elpsd: 1.2 secs | 1 caribouMovement move 5
    Jun11 07:56:15 frSprd total elpsd: 1.3 secs | 1 fireSpread burn 5
    Jun11 07:56:15 frSprd total elpsd: 1.3 secs | 1 fireSpread stats 5
    Jun11 07:56:15 crbMvm total elpsd: 1.3 secs | 1 caribouMovement plot 10
    Jun11 07:56:15 crbMvm total elpsd: 1.3 secs | 1.083 caribouMovement mov
    Jun11 07:56:15 crbMvm total elpsd: 1.4 secs | 1.083 caribouMovement plo
    Jun11 07:56:15 crbMvm total elpsd: 1.4 secs | 1.167 caribouMovement mov
    Jun11 07:56:15 crbMvm total elpsd: 1.4 secs | 1.167 caribouMovement plo
    Jun11 07:56:15 crbMvm total elpsd: 1.5 secs | 1.25 caribouMovement move
    Jun11 07:56:15 crbMvm total elpsd: 1.5 secs | 1.25 caribouMovement plot
    Jun11 07:56:15 crbMvm total elpsd: 1.6 secs | 1.333 caribouMovement mov
    Jun11 07:56:15 crbMvm total elpsd: 1.6 secs | 1.333 caribouMovement plo
    Jun11 07:56:15 crbMvm total elpsd: 1.6 secs | 1.417 caribouMovement mov
    Jun11 07:56:15 crbMvm total elpsd: 1.7 secs | 1.417 caribouMovement plo
    Jun11 07:56:15 crbMvm total elpsd: 1.7 secs | 1.5 caribouMovement move
    Jun11 07:56:15 crbMvm total elpsd: 1.7 secs | 1.5 caribouMovement plot
    Jun11 07:56:15 crbMvm total elpsd: 1.8 secs | 1.583 caribouMovement mov
    Jun11 07:56:15 crbMvm total elpsd: 1.8 secs | 1.583 caribouMovement plo
    Jun11 07:56:15 crbMvm total elpsd: 1.9 secs | 1.667 caribouMovement mov
    Jun11 07:56:15 crbMvm total elpsd: 1.9 secs | 1.667 caribouMovement plo
    Jun11 07:56:15 crbMvm total elpsd: 2 secs | 1.75 caribouMovement move 5
    Jun11 07:56:15 crbMvm total elpsd: 2 secs | 1.75 caribouMovement plot 1
    Jun11 07:56:15 crbMvm total elpsd: 2 secs | 1.833 caribouMovement move
    Jun11 07:56:15 crbMvm total elpsd: 2 secs | 1.833 caribouMovement plot
    Jun11 07:56:16 crbMvm total elpsd: 2.1 secs | 1.917 caribouMovement mov
    Jun11 07:56:16 crbMvm total elpsd: 2.1 secs | 1.917 caribouMovement plo
    Jun11 07:56:16 frSprd total elpsd: 2.2 secs | 2 fireSpread burn 5
    Jun11 07:56:16 crbMvm total elpsd: 2.2 secs | 2 caribouMovement move 5
    Jun11 07:56:16 frSprd total elpsd: 2.2 secs | 2 fireSpread stats 5
    Jun11 07:56:16 crbMvm total elpsd: 2.2 secs | 2 caribouMovement plot 10
    simList saved in
     SpaDES.core:::.pkgEnv$.sim
    It will be deleted at next spades() call.
    Quitting from lines 389-391 (ii-modules.Rmd)
    Error: processing vignette 'ii-modules.Rmd' failed with diagnostics:
    invalid 'path' argument
    --- failed re-building ‘ii-modules.Rmd’
    
    --- re-building ‘iii-cache.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) not available. Falling back to R Markdown v1.
    
    Attaching package: 'raster'
    
    The following object is masked from 'package:magrittr':
    
     extract
    
    Loading required package: quickPlot
    
    Attaching package: 'SpaDES.core'
    
    The following objects are masked from 'package:stats':
    
     end, start
    
    The following object is masked from 'package:utils':
    
     citation
    
    Setting:
     options(
     spades.modulePath = '/Volumes/Builds/packages/high-sierra-x86_64/results/4.0/SpaDES.core.Rcheck/SpaDES.core/sampleModules'
     )
    Paths set to:
     options(
     rasterTmpDir = '/Volumes/Temp/tmp/RtmpLNlFgC/raster'
     reproducible.cachePath = '/Volumes/Temp/tmp/RtmpLNlFgC/Require/cache'
     spades.inputPath = '/Volumes/Temp/tmp/RtmpjOO11B/SpaDES/inputs'
     spades.outputPath = '/Volumes/Temp/tmp/RtmpjOO11B/SpaDES/outputs'
     spades.modulePath = '/Volumes/Builds/packages/high-sierra-x86_64/results/4.0/SpaDES.core.Rcheck/SpaDES.core/sampleModules'
     )
    Loading required package: RColorBrewer
    --- finished re-building ‘iii-cache.Rmd’
    
    --- re-building ‘iv-advanced.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) not available. Falling back to R Markdown v1.
    --- finished re-building ‘iv-advanced.Rmd’
    
    --- re-building ‘v-automated-testing.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) not available. Falling back to R Markdown v1.
    --- finished re-building ‘v-automated-testing.Rmd’
    
    SUMMARY: processing the following file failed:
     ‘ii-modules.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-oldrel-macos-x86_64