CRAN Package Check Results for Package Seurat

Last updated on 2021-06-23 01:49:47 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 4.0.3 126.37 387.91 514.28 OK
r-devel-linux-x86_64-debian-gcc 4.0.3 88.97 281.47 370.44 OK
r-devel-linux-x86_64-fedora-clang 4.0.3 646.78 NOTE
r-devel-linux-x86_64-fedora-gcc 4.0.3 618.01 OK
r-devel-windows-x86_64 4.0.3 162.00 437.00 599.00 OK
r-devel-windows-x86_64-gcc10-UCRT 4.0.3 ERROR
r-patched-linux-x86_64 4.0.3 114.96 370.16 485.12 OK
r-patched-solaris-x86 4.0.3 713.40 ERROR
r-release-linux-x86_64 4.0.3 91.68 368.94 460.62 OK
r-release-macos-arm64 4.0.3 ERROR
r-release-macos-x86_64 4.0.3 ERROR
r-release-windows-ix86+x86_64 4.0.3 202.00 499.00 701.00 OK
r-oldrel-macos-x86_64 4.0.3 NOTE

Check Details

Version: 4.0.3
Check: package dependencies
Result: NOTE
    Imports includes 41 non-default packages.
    Importing from so many packages makes the package vulnerable to any of
    them becoming unavailable. Move as many as possible to Suggests and
    use conditionally.
Flavor: r-devel-linux-x86_64-fedora-clang

Version: 4.0.3
Check: installed package size
Result: NOTE
     installed size is 9.3Mb
     sub-directories of 1Mb or more:
     R 1.3Mb
     libs 7.4Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-x86_64

Version: 4.0.3
Check: Rd cross-references
Result: NOTE
    Undeclared package ‘Signac’ in Rd xrefs
Flavor: r-devel-linux-x86_64-fedora-clang

Version: 4.0.3
Check: package dependencies
Result: ERROR
    Packages required but not available: 'httr', 'plotly'
    
    Packages suggested but not available for checking:
     'MAST', 'DESeq2', 'monocle', 'enrichR'
    
    See section 'The DESCRIPTION file' in the 'Writing R Extensions'
    manual.
Flavor: r-devel-windows-x86_64-gcc10-UCRT

Version: 4.0.3
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘monocle’
Flavor: r-patched-solaris-x86

Version: 4.0.3
Check: tests
Result: ERROR
     Running ‘testthat.R’ [118s/160s]
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     > library(testthat)
     > library(Seurat)
     Attaching SeuratObject
     >
     > test_check("Seurat")
     ══ Skipped tests ═══════════════════════════════════════════════════════════════
     • On CRAN (19)
    
     ══ Failed tests ════════════════════════════════════════════════════════════════
     ── Error (test_load_10X.R:34:1): (code run outside of `test_that()`) ───────────
     Error: HDF5-API Errors:
     error #000: H5T.c in H5Tget_class(): line 1876: not a datatype
     class: HDF5
     major: Invalid arguments to routine
     minor: Inappropriate type
    
     Backtrace:
     █
     1. └─Seurat::Load10X_Spatial(data.dir = "../testdata/visium") test_load_10X.R:34:0
     2. └─Seurat::Read10X_h5(...)
     3. ├─infile[[paste0(genome, "/", feature_slot)]][]
     4. └─hdf5r:::`[.H5D`(...)
     5. └─x$read(...)
     6. └─self$read_low_level(...)
    
     [ FAIL 1 | WARN 9 | SKIP 19 | PASS 587 ]
     Error: Test failures
     Execution halted
Flavor: r-patched-solaris-x86

Version: 4.0.3
Check: package dependencies
Result: NOTE
    Packages suggested but not available for checking:
     'hdf5r', 'SummarizedExperiment', 'SingleCellExperiment', 'MAST',
     'DESeq2', 'GenomicRanges', 'rtracklayer', 'monocle'
Flavor: r-release-macos-arm64

Version: 4.0.3
Check: Rd cross-references
Result: NOTE
    Package unavailable to check Rd xrefs: ‘Signac’
Flavor: r-release-macos-arm64

Version: 4.0.3
Check: tests
Result: ERROR
     Running ‘testthat.R’ [21s/26s]
    Running the tests in ‘tests/testthat.R’ failed.
    Last 13 lines of output:
     > test_check("Seurat")
     ══ Skipped tests ═══════════════════════════════════════════════════════════════
     • On CRAN (19)
    
     ══ Failed tests ════════════════════════════════════════════════════════════════
     ── Error (test_load_10X.R:34:1): (code run outside of `test_that()`) ───────────
     Error: Please install hdf5r to read HDF5 files
     Backtrace:
     █
     1. └─Seurat::Load10X_Spatial(data.dir = "../testdata/visium") test_load_10X.R:34:0
     2. └─Seurat::Read10X_h5(...)
    
     [ FAIL 1 | WARN 9 | SKIP 19 | PASS 587 ]
     Error: Test failures
     Execution halted
Flavor: r-release-macos-arm64

Version: 4.0.3
Check: package dependencies
Result: NOTE
    Packages suggested but not available for checking:
     'hdf5r', 'MAST', 'monocle'
Flavor: r-release-macos-x86_64

Version: 4.0.3
Check: tests
Result: ERROR
     Running ‘testthat.R’ [28s/28s]
    Running the tests in ‘tests/testthat.R’ failed.
    Last 13 lines of output:
     > test_check("Seurat")
     ══ Skipped tests ═══════════════════════════════════════════════════════════════
     • On CRAN (19)
    
     ══ Failed tests ════════════════════════════════════════════════════════════════
     ── Error (test_load_10X.R:34:1): (code run outside of `test_that()`) ───────────
     Error: Please install hdf5r to read HDF5 files
     Backtrace:
     █
     1. └─Seurat::Load10X_Spatial(data.dir = "../testdata/visium") test_load_10X.R:34:0
     2. └─Seurat::Read10X_h5(...)
    
     [ FAIL 1 | WARN 9 | SKIP 19 | PASS 587 ]
     Error: Test failures
     Execution halted
Flavor: r-release-macos-x86_64

Version: 4.0.3
Check: package dependencies
Result: NOTE
    Packages suggested but not available for checking: 'MAST', 'monocle'
Flavor: r-oldrel-macos-x86_64

Version: 4.0.3
Check: dependencies in R code
Result: NOTE
    Missing or unexported objects:
     ‘SingleCellExperiment::mainExpName’
     ‘SingleCellExperiment::mainExpName<-’
Flavor: r-oldrel-macos-x86_64