* using log directory 'd:/Rcompile/CRANpkg/local/4.2/WoodSimulatR.Rcheck'
* using R version 4.2.3 (2023-03-15 ucrt)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: UTF-8
* checking for file 'WoodSimulatR/DESCRIPTION' ... OK
* this is package 'WoodSimulatR' version '0.6.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'WoodSimulatR' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [5s] OK
* checking Rd files ... [1s] OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... [3s] ERROR
Running examples in 'WoodSimulatR-Ex.R' failed
The error most likely occurred in:

> ### Name: simbase_covar
> ### Title: Calculate reference data for simulating values based on a
> ###   covariance matrix approach
> ### Aliases: simbase_covar
> 
> ### ** Examples
> 
> # obtain a dataset for demonstration
> dataset <- simulate_dataset();
> 
> # calculate a simbase without transforms
> simbase_covar(dataset, c('f', 'E', 'rho', 'E_dyn'));
$label
[1] "n5000_t_cov"

$variables
[1] "f"     "E"     "rho"   "E_dyn"

$transforms
list()

$covar
               f          E        rho      E_dyn
f       154.8334   21554.85   163.3545   19249.99
E     21554.8511 6286487.37 67721.3714 5810449.78
rho     163.3545   67721.37  2277.7861   77431.13
E_dyn 19249.9902 5810449.78 77431.1314 5856671.37

$means
          f           E         rho       E_dyn 
   29.81409 10632.15418   444.84522 11606.19187 

$loadtype
[1] "t"

attr(,"class")
[1] "simbase_covar"
> 
> # calcuate a simbase with log-transformed f
> simbase_covar(dataset, c('f', 'E', 'rho', 'E_dyn'), list(f = scales::log_trans()));
Error in simbase_covar(dataset, c("f", "E", "rho", "E_dyn"), list(f = scales::log_trans())) : 
  All transforms must be objects of class "trans" (see scales::trans)
Execution halted
* checking for unstated dependencies in 'tests' ... OK
* checking tests ... [5s] OK
  Running 'testthat.R' [4s]
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking re-building of vignette outputs ... [11s] ERROR
Error(s) in re-building vignettes:
--- re-building 'woodsimulatr_basics.Rmd' using rmarkdown

Quitting from lines 431-439 [unnamed-chunk-15] (woodsimulatr_basics.Rmd)
Error: processing vignette 'woodsimulatr_basics.Rmd' failed with diagnostics:
All transforms must be objects of class "trans" (see scales::trans)
--- failed re-building 'woodsimulatr_basics.Rmd'

SUMMARY: processing the following file failed:
  'woodsimulatr_basics.Rmd'

Error: Vignette re-building failed.
Execution halted

* checking PDF version of manual ... OK
* DONE
Status: 2 ERRORs