treesliceR: To Slice Phylogenetic Trees and Infer Evolutionary Patterns Over Time

Provide a range of functions with multiple criteria for cutting phylogenetic trees at any evolutionary depth. It enables users to cut trees in any orientation, such as rootwardly (from root to tips) and tipwardly (from tips to its root), or allows users to define a specific time interval of interest. It can also be used to create multiple tree pieces of equal temporal width. Moreover, it allows the assessment of novel temporal rates for various phylogenetic indexes, which can be quickly displayed graphically.

Version: 1.0.1
Depends: R (≥ 2.10)
Imports: ape (≥ 5.7-1), doParallel (≥ 1.0.17), foreach (≥ 1.5.2), ggplot2 (≥ 3.4.2), sf (≥ 1.0-9)
Suggests: devtools, ggpubr (≥ 0.6.0), knitr, rmarkdown, testthat (≥ 3.0.0)
Published: 2024-02-08
Author: Matheus Lima Araujo ORCID iD [aut, cre, cph], Luiz Gabriel Souza e Souza Ferreira ORCID iD [aut], Gabriel Nakamura ORCID iD [aut], Marco Tulio Pacheco Coelho ORCID iD [aut], Thiago Fernando Rangel ORCID iD [aut]
Maintainer: Matheus Lima Araujo <matheusaraujolima at live.com>
BugReports: https://github.com/AraujoMat/treesliceR/issues
License: MIT + file LICENSE
URL: https://github.com/AraujoMat/treesliceR, https://araujomat.github.io/treesliceR/
NeedsCompilation: no
Materials: README NEWS
CRAN checks: treesliceR results

Documentation:

Reference manual: treesliceR.pdf
Vignettes: Introduction to treesliceR
Passerines Distribution
Passerines Diversification

Downloads:

Package source: treesliceR_1.0.1.tar.gz
Windows binaries: r-devel: treesliceR_1.0.1.zip, r-release: treesliceR_1.0.1.zip, r-oldrel: treesliceR_1.0.1.zip
macOS binaries: r-release (arm64): treesliceR_1.0.1.tgz, r-oldrel (arm64): treesliceR_1.0.1.tgz, r-release (x86_64): treesliceR_1.0.1.tgz
Old sources: treesliceR archive

Linking:

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