tmod: Feature Set Enrichment Analysis for Metabolomics and Transcriptomics

Methods and feature set definitions for feature or gene set enrichment analysis in transcriptional and metabolic profiling data. Package includes tests for enrichment based on ranked lists of features, functions for visualisation and multivariate functional analysis. See Zyla et al (2019) <doi:10.1093/bioinformatics/btz447>.

Version: 0.50.11
Depends: R (≥ 2.10)
Imports: beeswarm, tagcloud, XML, methods, plotwidgets, RColorBrewer, gplots, tibble, pheatmap, ggplot2, tidyr, purrr, rlang, tidyselect, ggrepel
Suggests: testthat, knitr, rmarkdown, dplyr, pander, pca3d, cowplot
Published: 2022-09-26
Author: January Weiner ORCID iD [aut, cre]
Maintainer: January Weiner <january.weiner at gmail.com>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2.0)]
NeedsCompilation: no
Materials: README ChangeLog
CRAN checks: tmod results

Documentation:

Reference manual: tmod.pdf
Vignettes: Transcriptional Modules Enrichment Analysis

Downloads:

Package source: tmod_0.50.11.tar.gz
Windows binaries: r-devel: not available, r-release: tmod_0.50.11.zip, r-oldrel: tmod_0.50.11.zip
macOS binaries: r-release (arm64): tmod_0.50.11.tgz, r-oldrel (arm64): tmod_0.50.11.tgz, r-release (x86_64): tmod_0.50.11.tgz, r-oldrel (x86_64): tmod_0.50.11.tgz
Old sources: tmod archive

Linking:

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