demic: Dynamic Estimator of Microbial Communities

Multi-sample algorithm based on contigs and coverage values, to infer the relative distances of contigs from the replication origin and to accurately compare bacterial growth rates between samples. Yuan Gao and Hongzhe Li (2018) <doi:10.1038/s41592-018-0182-0>.

Version: 2.0.0
Depends: R (≥ 2.10)
Imports: lme4, Matrix (≥ 1.6-2), reshape2
Suggests: covr, lintr, testthat (≥ 3.0.0)
Published: 2024-01-22
Author: Yuan Gao [aut, cph], Charlie Bushman [cre]
Maintainer: Charlie Bushman <ctbushman at gmail.com>
BugReports: https://github.com/Ulthran/DEMIC/issues
License: GPL (≥ 3)
URL: https://github.com/Ulthran/DEMIC
NeedsCompilation: no
Materials: README NEWS
CRAN checks: demic results

Documentation:

Reference manual: demic.pdf

Downloads:

Package source: demic_2.0.0.tar.gz
Windows binaries: r-prerel: demic_2.0.0.zip, r-release: demic_2.0.0.zip, r-oldrel: demic_2.0.0.zip
macOS binaries: r-prerel (arm64): demic_2.0.0.tgz, r-release (arm64): demic_2.0.0.tgz, r-oldrel (arm64): demic_2.0.0.tgz, r-prerel (x86_64): demic_2.0.0.tgz, r-release (x86_64): demic_2.0.0.tgz
Old sources: demic archive

Linking:

Please use the canonical form https://CRAN.R-project.org/package=demic to link to this page.