clustermole: Unbiased Single-Cell Transcriptomic Data Cell Type Identification

Assignment of cell type labels to single-cell RNA sequencing (scRNA-seq) clusters is often a time-consuming process that involves manual inspection of the cluster marker genes complemented with a detailed literature search. This is especially challenging when unexpected or poorly described populations are present. The clustermole R package provides methods to query thousands of human and mouse cell identity markers sourced from a variety of databases.

Version: 1.1.0
Depends: R (≥ 3.6)
Imports: dplyr, GSEABase, GSVA (≥ 1.26.0), magrittr, methods, rlang (≥ 0.1.2), singscore, tibble, tidyr, utils
Suggests: covr, knitr, prettydoc, rmarkdown, roxygen2, testthat (≥ 2.1.0)
Published: 2021-01-26
Author: Igor Dolgalev [aut, cre]
Maintainer: Igor Dolgalev <igor.dolgalev at nyumc.org>
BugReports: https://github.com/igordot/clustermole/issues
License: MIT + file LICENSE
URL: https://igordot.github.io/clustermole/, https://github.com/igordot/clustermole
NeedsCompilation: no
Materials: README NEWS
CRAN checks: clustermole results

Downloads:

Reference manual: clustermole.pdf
Vignettes: Introduction to clustermole
Package source: clustermole_1.1.0.tar.gz
Windows binaries: r-devel: clustermole_1.1.0.zip, r-release: clustermole_1.1.0.zip, r-oldrel: clustermole_1.1.0.zip
macOS binaries: r-release: clustermole_1.1.0.tgz, r-oldrel: clustermole_1.0.1.tgz
Old sources: clustermole archive

Linking:

Please use the canonical form https://CRAN.R-project.org/package=clustermole to link to this page.