SKAT: SNP-Set (Sequence) Kernel Association Test

Functions for kernel-regression-based association tests including Burden test, SKAT and SKAT-O. These methods aggregate individual SNP score statistics in a SNP set and efficiently compute SNP-set level p-values.

Version: 2.0.0
Depends: R (≥ 2.13.0), Matrix, SPAtest
Published: 2020-03-09
Author: Seunggeun (Shawn) Lee and Zhangchen Zhao, with contributions from Larisa Miropolsky and Michael Wu
Maintainer: Seunggeun (Shawn) Lee <lee7801 at snu.ac.kr>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
NeedsCompilation: yes
CRAN checks: SKAT results

Downloads:

Reference manual: SKAT.pdf
Vignettes: SKAT
Package source: SKAT_2.0.0.tar.gz
Windows binaries: r-devel: SKAT_2.0.0.zip, r-release: SKAT_2.0.0.zip, r-oldrel: SKAT_2.0.0.zip
macOS binaries: r-release: SKAT_2.0.0.tgz, r-oldrel: SKAT_2.0.0.tgz
Old sources: SKAT archive

Reverse dependencies:

Reverse depends: FSTpackage, GenoScan, LGEWIS, LGRF, Mega2R, WGScan
Reverse imports: GBJ, MetaSKAT, SMUT, zfa
Reverse suggests: BGData, FastKM, seqMeta, seqminer

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