CRAN Package Check Results for Package genBaRcode

Last updated on 2020-09-21 07:56:02 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.2.3 9.58 266.24 275.82 OK
r-devel-linux-x86_64-debian-gcc 1.2.3 7.59 231.22 238.81 OK
r-devel-linux-x86_64-fedora-clang 1.2.3 334.04 NOTE
r-devel-linux-x86_64-fedora-gcc 1.2.3 359.46 OK
r-devel-windows-ix86+x86_64 1.2.3 21.00 272.00 293.00 OK
r-patched-linux-x86_64 1.2.3 8.16 252.52 260.68 OK
r-patched-solaris-x86 1.2.3 627.60 OK
r-release-linux-x86_64 1.2.3 7.45 260.17 267.62 OK
r-release-macos-x86_64 1.2.3 ERROR
r-release-windows-ix86+x86_64 1.2.3 20.00 318.00 338.00 OK
r-oldrel-macos-x86_64 1.2.3 ERROR
r-oldrel-windows-ix86+x86_64 1.2.3 11.00 301.00 312.00 OK

Check Details

Version: 1.2.3
Check: package dependencies
Result: NOTE
    Imports includes 22 non-default packages.
    Importing from so many packages makes the package vulnerable to any of
    them becoming unavailable. Move as many as possible to Suggests and
    use conditionally.
Flavor: r-devel-linux-x86_64-fedora-clang

Version: 1.2.3
Check: package dependencies
Result: ERROR
    Package required but not available: ‘ggtree’
    
    See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
    manual.
Flavor: r-release-macos-x86_64

Version: 1.2.3
Check: tests
Result: ERROR
     Running ‘testthat.R’ [6s/5s]
    Running the tests in ‘tests/testthat.R’ failed.
    Last 13 lines of output:
     4. base::getNamespace(ns)
     5. base::loadNamespace(name)
     7. base::loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]])
     9. base::loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]])
     10. base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
     11. base:::withOneRestart(expr, restarts[[1L]])
     12. base:::doWithOneRestart(return(expr), restart)
    
     ══ testthat results ═══════════════════════════════════════════════════════════
     [ OK: 21 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 2 ]
     1. Error: processingRawData - extractBarcodes (@test_raw_data_functions.R#44)
     2. Error: processingRawData - fixBorderlineBCs and extractWobble (@test_raw_data_functions.R#121)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-oldrel-macos-x86_64

Version: 1.2.3
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
     ...
    --- re-building ‘genBaRcode_GUI_Vignette.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    --- finished re-building ‘genBaRcode_GUI_Vignette.Rmd’
    
    --- re-building ‘genBaRcode_Vignette.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    Quitting from lines 155-176 (genBaRcode_Vignette.Rmd)
    Error: processing vignette 'genBaRcode_Vignette.Rmd' failed with diagnostics:
    there is no package called 'GenomeInfoDbData'
    --- failed re-building ‘genBaRcode_Vignette.Rmd’
    
    SUMMARY: processing the following file failed:
     ‘genBaRcode_Vignette.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-oldrel-macos-x86_64