CRAN Package Check Results for Package eqtl

Last updated on 2020-05-25 01:48:51 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.1-7 5.18 113.51 118.69 NOTE
r-devel-linux-x86_64-debian-gcc 1.1-7 3.91 84.00 87.91 NOTE
r-devel-linux-x86_64-fedora-clang 1.1-7 140.25 NOTE
r-devel-linux-x86_64-fedora-gcc 1.1-7 139.12 NOTE
r-devel-windows-ix86+x86_64 1.1-7 12.00 120.00 132.00 NOTE
r-patched-linux-x86_64 1.1-7 5.32 112.29 117.61 NOTE
r-patched-solaris-x86 1.1-7 203.60 NOTE
r-release-linux-x86_64 1.1-7 4.70 114.14 118.84 NOTE
r-release-osx-x86_64 1.1-7 NOTE
r-release-windows-ix86+x86_64 1.1-7 9.00 160.00 169.00 NOTE
r-oldrel-osx-x86_64 1.1-7 NOTE
r-oldrel-windows-ix86+x86_64 1.1-7 7.00 163.00 170.00 NOTE

Check Details

Version: 1.1-7
Check: top-level files
Result: NOTE
    Non-standard files/directories found at top level:
     'docs' 'license.txt' 'status.txt'
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 1.1-7
Check: dependencies in R code
Result: NOTE
    'library' or 'require' call to 'qtl' which was already attached by Depends.
     Please remove these calls from your code.
    Unexported objects imported by ':::' calls:
     'qtl:::c.scanone' 'qtl:::plot.scanone'
     See the note in ?`:::` about the use of this operator.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64, r-release-windows-ix86+x86_64, r-oldrel-osx-x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.1-7
Check: R code for possible problems
Result: NOTE
    calc.Rsq : write.lm: no visible global function definition for 'combn'
    calc.Rsq: no visible global function definition for 'anova'
    calc.Rsq: no visible global function definition for 'lm'
    calc.Rsq: no visible global function definition for 'as.formula'
    define.peak: no visible global function definition for 'png'
    define.peak: no visible global function definition for 'abline'
    define.peak: no visible global function definition for 'dev.off'
    genoplot: no visible global function definition for 'png'
    genoplot: no visible global function definition for 'par'
    genoplot: no visible global function definition for 'hist'
    genoplot: no visible global function definition for 'axis'
    genoplot: no visible global function definition for 'abline'
    genoplot: no visible global function definition for 'box'
    genoplot: no visible global function definition for 'dev.off'
    genoplot : gqplot: no visible global function definition for 'png'
    genoplot : gqplot: no visible global function definition for 'axis'
    genoplot : gqplot: no visible global function definition for 'abline'
    genoplot : gqplot: no visible global function definition for 'box'
    genoplot : gqplot: no visible global function definition for 'dev.off'
    genoplot : gqplot: no visible global function definition for 'matplot'
    genoplot: no visible global function definition for 'rainbow'
    peaksummary: no visible global function definition for 'pie'
    peaksummary: no visible global function definition for 'barplot'
    peaksummary: no visible global function definition for 'median'
    peaksummary: no visible global function definition for 'var'
    peaksummary: no visible global function definition for 'boxplot'
    peaksummary: no visible binding for global variable 'median'
    peaksummary: no visible binding for global variable 'var'
    peaksummary: no visible global function definition for 'hist'
    plotRsq: no visible global function definition for 'hist'
    Undefined global functions or variables:
     abline anova as.formula axis barplot box boxplot combn dev.off hist
     lm matplot median par pie png rainbow var
    Consider adding
     importFrom("grDevices", "dev.off", "png", "rainbow")
     importFrom("graphics", "abline", "axis", "barplot", "box", "boxplot",
     "hist", "matplot", "par", "pie")
     importFrom("stats", "anova", "as.formula", "lm", "median", "var")
     importFrom("utils", "combn")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64, r-release-windows-ix86+x86_64

Version: 1.1-7
Check: for non-standard things in the check directory
Result: NOTE
    Found the following files/directories:
     'CATane_4_27_.png' 'CATavz_4_37_.png' 'CATbaa_4_13_.png'
     'CATbko_4_36_.png' 'CATbuu_1_45_.png' 'CATbuu_4_45_.png'
     'CATbuu_5_45_.png' 'CATbzp_4_50_.png' 'CATbzx_4_29_.png'
     'CATdbn_1_18_.png' 'CATdbn_3_18_.png' 'CATdmq_4_49_.png'
     'CATepg_4_44_.png' 'CATfgb_4_7_.png' 'CATfgb_5_7_.png'
     'CATfnu_4_21_.png' 'CATfnu_5_21_.png' 'CATham_4_14_.png'
     'CATham_5_14_.png' 'CATipy_4_19_.png' 'CATjoj_2_22_.png'
     'CATjpz_4_35_.png' 'CATjxh_1_31_.png' 'CATlbg_4_40_.png'
     'CATlkr_4_32_.png' 'CATlzh_4_43_.png' 'CATntj_4_24_.png'
     'CAToti_5_28_.png' 'CATppt_4_4_.png' 'CATppt_5_4_.png'
     'CATpsl_4_23_.png' 'CATpyn_4_20_.png' 'CATqoq_4_8_.png'
     'CATrck_4_26_.png' 'CATrjo_4_30_.png' 'CATsgu_4_9_.png'
     'CATsgu_5_9_.png' 'CATtez_4_34_.png' 'CATudg_4_16_.png'
     'CATuhl_4_39_.png' 'CATuhl_5_39_.png' 'CATvbb_4_41_.png'
     'CATwgo_4_17_.png' 'CATwgo_5_17_.png' 'CATwrn_4_46_.png'
     'CATwwh_4_10_.png' 'CATxmc_2_48_.png' 'CATxni_5_6_.png' 'ID_5_1_.png'
     'ae_dotplot_traitxqtl.png' 'ae_siplot_traitxqtl.png'
     'histogram_controled_etrait.png' 'histogram_qtl.png'
     'lod_dotplot_traitxqtl.png' 'lod_siplot_traitxqtl.png'
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64

Version: 1.1-7
Check: R code for possible problems
Result: NOTE
    calc.Rsq : write.lm: no visible global function definition for ‘combn’
    calc.Rsq: no visible global function definition for ‘anova’
    calc.Rsq: no visible global function definition for ‘lm’
    calc.Rsq: no visible global function definition for ‘as.formula’
    define.peak: no visible global function definition for ‘png’
    define.peak: no visible global function definition for ‘abline’
    define.peak: no visible global function definition for ‘dev.off’
    genoplot: no visible global function definition for ‘png’
    genoplot: no visible global function definition for ‘par’
    genoplot: no visible global function definition for ‘hist’
    genoplot: no visible global function definition for ‘axis’
    genoplot: no visible global function definition for ‘abline’
    genoplot: no visible global function definition for ‘box’
    genoplot: no visible global function definition for ‘dev.off’
    genoplot : gqplot: no visible global function definition for ‘png’
    genoplot : gqplot: no visible global function definition for ‘plot’
    genoplot : gqplot: no visible global function definition for ‘axis’
    genoplot : gqplot: no visible global function definition for ‘abline’
    genoplot : gqplot: no visible global function definition for ‘box’
    genoplot : gqplot: no visible global function definition for ‘dev.off’
    genoplot : gqplot: no visible global function definition for ‘matplot’
    genoplot: no visible global function definition for ‘rainbow’
    peaksummary: no visible global function definition for ‘pie’
    peaksummary: no visible global function definition for ‘barplot’
    peaksummary: no visible global function definition for ‘median’
    peaksummary: no visible global function definition for ‘var’
    peaksummary: no visible global function definition for ‘boxplot’
    peaksummary: no visible binding for global variable ‘median’
    peaksummary: no visible binding for global variable ‘var’
    peaksummary: no visible global function definition for ‘hist’
    plotRsq: no visible global function definition for ‘hist’
    Undefined global functions or variables:
     abline anova as.formula axis barplot box boxplot combn dev.off hist
     lm matplot median par pie plot png rainbow var
    Consider adding
     importFrom("grDevices", "dev.off", "png", "rainbow")
     importFrom("graphics", "abline", "axis", "barplot", "box", "boxplot",
     "hist", "matplot", "par", "pie", "plot")
     importFrom("stats", "anova", "as.formula", "lm", "median", "var")
     importFrom("utils", "combn")
    to your NAMESPACE file.
Flavors: r-oldrel-osx-x86_64, r-oldrel-windows-ix86+x86_64