CRAN Package Check Results for Package BEDASSLE

Last updated on 2020-10-29 13:48:39 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.5 11.55 90.80 102.35 NOTE
r-devel-linux-x86_64-debian-gcc 1.5 8.94 66.94 75.88 NOTE
r-devel-linux-x86_64-fedora-clang 1.5 130.05 NOTE
r-devel-linux-x86_64-fedora-gcc 1.5 133.58 NOTE
r-devel-windows-ix86+x86_64 1.5 23.00 106.00 129.00 NOTE
r-patched-linux-x86_64 1.5 10.73 83.27 94.00 NOTE
r-patched-solaris-x86 1.5 163.50 NOTE
r-release-linux-x86_64 1.5 11.37 81.88 93.25 NOTE
r-release-macos-x86_64 1.5 NOTE
r-release-windows-ix86+x86_64 1.5 17.00 83.00 100.00 NOTE
r-oldrel-macos-x86_64 1.5 NOTE
r-oldrel-windows-ix86+x86_64 1.5 33.00 98.00 131.00 NOTE

Check Details

Version: 1.5
Check: R code for possible problems
Result: NOTE
    BB_Prior_prob_phi: no visible global function definition for 'dexp'
    BB_Update_mu: no visible global function definition for 'rnorm'
    BB_Update_mu: no visible global function definition for 'runif'
    BB_Update_phi: no visible global function definition for 'rnorm'
    BB_Update_phi: no visible global function definition for 'runif'
    BB_Update_thetas : <anonymous>: no visible global function definition
     for 'rnorm'
    BB_Update_thetas: no visible global function definition for 'runif'
    Initialize.params: no visible global function definition for 'sd'
    MCMC: no visible global function definition for 'runif'
    MCMC_BB: no visible global function definition for 'runif'
    MCMC_BB: no visible global function definition for 'rexp'
    Prior_prob_alpha0: no visible global function definition for 'dgamma'
    Prior_prob_alpha2: no visible global function definition for 'dunif'
    Prior_prob_alphaD: no visible global function definition for 'dexp'
    Prior_prob_alphaE: no visible global function definition for 'dexp'
    Prior_prob_beta: no visible global function definition for 'dgamma'
    Prior_prob_mu: no visible global function definition for 'dnorm'
    Update_a0: no visible global function definition for 'rgamma'
    Update_a2: no visible global function definition for 'rnorm'
    Update_a2: no visible global function definition for 'runif'
    Update_aD: no visible global function definition for 'rnorm'
    Update_aD: no visible global function definition for 'runif'
    Update_aE: no visible global function definition for 'rnorm'
    Update_aE: no visible global function definition for 'runif'
    Update_beta: no visible global function definition for 'rgamma'
    Update_mu: no visible global function definition for 'rnorm'
    Update_mu: no visible global function definition for 'runif'
    Update_thetas : <anonymous>: no visible global function definition for
     'rnorm'
    Update_thetas: no visible global function definition for 'runif'
    calculate.all.pairwise.Fst: no visible global function definition for
     'combn'
    plot_acceptance_rate: no visible global function definition for
     'adjustcolor'
    plot_acceptance_rate: no visible global function definition for
     'abline'
    plot_acceptance_rate: no visible global function definition for
     'median'
    plot_acceptance_rate: no visible global function definition for
     'polygon'
    plot_all_phi_marginals: no visible global function definition for
     'devAskNewPage'
    plot_all_phi_trace: no visible global function definition for
     'devAskNewPage'
    plot_joint_marginal: no visible global function definition for
     'rainbow'
    plot_joint_marginal: no visible global function definition for 'legend'
    plot_marginal: no visible global function definition for 'hist'
    plot_marginal: no visible global function definition for 'lines'
    plot_marginal: no visible global function definition for 'polygon'
    plot_marginal: no visible global function definition for 'adjustcolor'
    plot_marginal: no visible global function definition for 'segments'
    plot_marginal: no visible global function definition for 'median'
    plot_phi_marginal: no visible global function definition for 'hist'
    plot_phi_marginal: no visible global function definition for 'lines'
    plot_phi_marginal: no visible global function definition for 'polygon'
    plot_phi_marginal: no visible global function definition for
     'adjustcolor'
    plot_phi_marginal: no visible global function definition for 'segments'
    plot_phi_marginal: no visible global function definition for 'median'
    plot_phi_trace: no visible global function definition for 'adjustcolor'
    plot_phi_trace: no visible global function definition for 'abline'
    plot_phi_trace: no visible global function definition for 'median'
    plot_trace: no visible global function definition for 'adjustcolor'
    plot_trace: no visible global function definition for 'abline'
    plot_trace: no visible global function definition for 'median'
    simulate_allele_count_data: no visible global function definition for
     'rbinom'
    Undefined global functions or variables:
     abline adjustcolor combn devAskNewPage dexp dgamma dnorm dunif hist
     legend lines median polygon rainbow rbinom rexp rgamma rnorm runif sd
     segments
    Consider adding
     importFrom("grDevices", "adjustcolor", "devAskNewPage", "rainbow")
     importFrom("graphics", "abline", "hist", "legend", "lines", "polygon",
     "segments")
     importFrom("stats", "dexp", "dgamma", "dnorm", "dunif", "median",
     "rbinom", "rexp", "rgamma", "rnorm", "runif", "sd")
     importFrom("utils", "combn")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-macos-x86_64, r-release-windows-ix86+x86_64

Version: 1.5
Check: for non-standard things in the check directory
Result: NOTE
    Found the following files/directories:
     'example_Initial.parameters.Robj' 'example_MCMC_output1.Robj'
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64

Version: 1.5
Check: R code for possible problems
Result: NOTE
    BB_Prior_prob_phi: no visible global function definition for ‘dexp’
    BB_Update_mu: no visible global function definition for ‘rnorm’
    BB_Update_mu: no visible global function definition for ‘runif’
    BB_Update_phi: no visible global function definition for ‘rnorm’
    BB_Update_phi: no visible global function definition for ‘runif’
    BB_Update_thetas : <anonymous>: no visible global function definition
     for ‘rnorm’
    BB_Update_thetas: no visible global function definition for ‘runif’
    Initialize.params: no visible global function definition for ‘sd’
    MCMC: no visible global function definition for ‘runif’
    MCMC_BB: no visible global function definition for ‘runif’
    MCMC_BB: no visible global function definition for ‘rexp’
    Prior_prob_alpha0: no visible global function definition for ‘dgamma’
    Prior_prob_alpha2: no visible global function definition for ‘dunif’
    Prior_prob_alphaD: no visible global function definition for ‘dexp’
    Prior_prob_alphaE: no visible global function definition for ‘dexp’
    Prior_prob_beta: no visible global function definition for ‘dgamma’
    Prior_prob_mu: no visible global function definition for ‘dnorm’
    Update_a0: no visible global function definition for ‘rgamma’
    Update_a2: no visible global function definition for ‘rnorm’
    Update_a2: no visible global function definition for ‘runif’
    Update_aD: no visible global function definition for ‘rnorm’
    Update_aD: no visible global function definition for ‘runif’
    Update_aE: no visible global function definition for ‘rnorm’
    Update_aE: no visible global function definition for ‘runif’
    Update_beta: no visible global function definition for ‘rgamma’
    Update_mu: no visible global function definition for ‘rnorm’
    Update_mu: no visible global function definition for ‘runif’
    Update_thetas : <anonymous>: no visible global function definition for
     ‘rnorm’
    Update_thetas: no visible global function definition for ‘runif’
    calculate.all.pairwise.Fst: no visible global function definition for
     ‘combn’
    plot_acceptance_rate: no visible global function definition for ‘plot’
    plot_acceptance_rate: no visible global function definition for
     ‘adjustcolor’
    plot_acceptance_rate: no visible global function definition for
     ‘abline’
    plot_acceptance_rate: no visible global function definition for
     ‘median’
    plot_acceptance_rate: no visible global function definition for
     ‘polygon’
    plot_all_phi_marginals: no visible global function definition for
     ‘devAskNewPage’
    plot_all_phi_trace: no visible global function definition for
     ‘devAskNewPage’
    plot_joint_marginal: no visible global function definition for ‘plot’
    plot_joint_marginal: no visible global function definition for
     ‘rainbow’
    plot_joint_marginal: no visible global function definition for ‘legend’
    plot_marginal: no visible global function definition for ‘plot’
    plot_marginal: no visible global function definition for ‘hist’
    plot_marginal: no visible global function definition for ‘lines’
    plot_marginal: no visible global function definition for ‘polygon’
    plot_marginal: no visible global function definition for ‘adjustcolor’
    plot_marginal: no visible global function definition for ‘segments’
    plot_marginal: no visible global function definition for ‘median’
    plot_phi_marginal: no visible global function definition for ‘plot’
    plot_phi_marginal: no visible global function definition for ‘hist’
    plot_phi_marginal: no visible global function definition for ‘lines’
    plot_phi_marginal: no visible global function definition for ‘polygon’
    plot_phi_marginal: no visible global function definition for
     ‘adjustcolor’
    plot_phi_marginal: no visible global function definition for ‘segments’
    plot_phi_marginal: no visible global function definition for ‘median’
    plot_phi_trace: no visible global function definition for ‘plot’
    plot_phi_trace: no visible global function definition for ‘adjustcolor’
    plot_phi_trace: no visible global function definition for ‘abline’
    plot_phi_trace: no visible global function definition for ‘median’
    plot_trace: no visible global function definition for ‘plot’
    plot_trace: no visible global function definition for ‘adjustcolor’
    plot_trace: no visible global function definition for ‘abline’
    plot_trace: no visible global function definition for ‘median’
    simulate_allele_count_data: no visible global function definition for
     ‘rbinom’
    Undefined global functions or variables:
     abline adjustcolor combn devAskNewPage dexp dgamma dnorm dunif hist
     legend lines median plot polygon rainbow rbinom rexp rgamma rnorm
     runif sd segments
    Consider adding
     importFrom("grDevices", "adjustcolor", "devAskNewPage", "rainbow")
     importFrom("graphics", "abline", "hist", "legend", "lines", "plot",
     "polygon", "segments")
     importFrom("stats", "dexp", "dgamma", "dnorm", "dunif", "median",
     "rbinom", "rexp", "rgamma", "rnorm", "runif", "sd")
     importFrom("utils", "combn")
    to your NAMESPACE file.
Flavors: r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64